U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX000382: 454 sequencing of Human HapMap individual NA12815 genomic fragment library
34 LS454 (454 GS FLX) runs: 17.8M spots, 4.8G bases, 9.7Gb downloads

Design: FLX fragment
Submitted by: Baylor College of Medicine (BCM)
Study: 1000 Genomes Project Pilot 1 (low coverage sequencing of 180 Hapmap individuals from multiple populations.
show Abstracthide Abstract
1000 Genomes first pilot study: Low coverage sequencing of 180 individuals. <P>The purpose of the project is to support the discovery and understanding of genetic variants that influence human disease. Specifically defined goals are (a) the discovery of single nucleotide variants at frequencies of 1% or higher in diverse populations, (b) even more comprehensive discovery (variants down to frequencies of 0.1 - 0.5%) in functional gene regions, and (c) discovery of structural variants, such as copy number variants, other insertions and deletions, and inversions, including sequence-level understanding of breakpoints.</P> <P>The volume of data generated by 1000genomes project is unprecedented.</P> The data is accessible from two mirrored ftp sites at <A HREF="ftp://ftp.1000genomes.ebi.ac.uk">EBI</A> and <A HREF="ftp://ftp-trace.ncbi.nih.gov/1000genomes/">NCBI</A>.
Sample: Coriell GM12815
SAMN00801774 • SRS000085 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: 4WG_TG-P1_005sA
Instrument: 454 GS FLX
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
         forward

Runs: 34 runs, 17.8M spots, 4.8G bases, 9.7Gb
Run# of Spots# of BasesSizePublished
SRR001527577,239159.5M334.8Mb2008-07-01
SRR001528439,036119.1M254.4Mb2008-07-01
SRR001536636,606171.4M357.9Mb2008-07-01
SRR001537532,179145.4M310.7Mb2008-07-01
SRR001538507,816138.6M291.1Mb2008-07-01
SRR001539379,634103.2M219.8Mb2008-07-01
SRR001540507,296144.3M304.9Mb2008-07-01
SRR001541556,500150.3M316.6Mb2008-07-01
SRR001542496,768135.1M289.4Mb2008-07-01
SRR001543497,764134.8M283.7Mb2008-07-01
SRR001544533,857160.8M336.9Mb2008-07-01
SRR001545522,974140.5M289.5Mb2008-07-01
SRR001546475,252128.9M274Mb2008-07-01
SRR001547363,03198.8M211.8Mb2008-07-01
SRR001548456,907125.5M266.3Mb2008-07-01
There are 19 omitted runs. See all runs in Run Selector.

ID:
383

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...